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Final changes for 1.3.3 #322

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Merged
merged 18 commits into from
Oct 17, 2022
Merged

Final changes for 1.3.3 #322

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65e08eb
Add option for filtering leading zeros and correct zero_threshold (#285)
LloydChapman Oct 14, 2022
5bd2eb3
Fixed a few typos (#306)
pitmonticone Oct 14, 2022
e2aa0c2
Add estimate_secondarry and estimate_truncation simple tests (#315)
seabbs Oct 14, 2022
13c8ce1
Add tests adjust to report (#316)
seabbs Oct 14, 2022
60fcb38
add plot arg to regional_summary (#319)
seabbs Oct 14, 2022
7990ab3
hotfix adjust tests to be explicit snaps
seabbs Oct 14, 2022
61c0d34
Optimisations and updates for CRAN check (#320)
seabbs Oct 15, 2022
38ad8c8
Add skeleton for documentation (#321)
seabbs Oct 16, 2022
2081487
add improve docs titles
seabbs Oct 16, 2022
25b929d
update pkgdown to new format
seabbs Oct 16, 2022
441d12b
add template for CRAN comments
seabbs Oct 16, 2022
2afca03
Hotfix: Use of reverse_mf minimised
seabbs Oct 16, 2022
3e43d35
Hotfix: pkgdown yaml
seabbs Oct 16, 2022
7377366
update devcontainer
seabbs Oct 17, 2022
efae371
assign a dev version
seabbs Oct 17, 2022
a28783b
update Docker to work better with vscode
seabbs Oct 17, 2022
ad19db3
fix dockerfile
seabbs Oct 17, 2022
39cea6a
redefine docker context
seabbs Oct 17, 2022
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update pkgdown to new format
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@seabbs
seabbs committed Oct 16, 2022
commit 25b929dafed93ffd46e1d9fb00fa112c322dfc34
40 changes: 18 additions & 22 deletions _pkgdown.yml
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Expand Up @@ -25,28 +25,24 @@ authors:
href: "https://www.lshtm.ac.uk/aboutus/people/funk.sebastian"

navbar:
type: inverse
left:
- text: "Home"
href: index.html
- text: News
href: news/index.html
- icon: fa-file-code-o
text: "Functions"
href: reference/index.html
- text: Model definitions
- text: estimate_infections()
href: vignettes/estimate_infections.html
- text: estimate_secondary()
href: vignettes/estimate_secondary.html
- text: estimate_truncation()
href: vignettes/estimate_truncation.html
- text: Case studies
- text: External case studies and use in the literature
href: vignettes/case-studies.html
right:
- icon: fa-github
href: https://github.com/epiforecasts/EpiNow2
structure:
left: [reference, modeldefs, casestudies, news]
right: [search, github]
components:
modeldefs:
text: Model definitions
menu:
- text: estimate_infections()
href: vignettes/estimate_infections.html
- text: estimate_secondary()
href: vignettes/estimate_secondary.html
- text: estimate_truncation()
href: vignettes/estimate_truncation.html
casestudies:
text: Case studies
menu:
- text: External case studies and use in the literature
href: vignettes/case-studies.html

figures:
fig.width: 9
Expand Down