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disable verbosity for failing chains #433

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Merged
merged 10 commits into from
Jul 24, 2023
Merged

disable verbosity for failing chains #433

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b7f4035
disable verbosity for failing chains
sbfnk Jul 21, 2023
6cb25cb
reduce verbosity on estimate_secondary test
sbfnk Jul 21, 2023
eba6b96
return NULL if no samples
sbfnk Jul 21, 2023
c99910c
fix test to check for correct error
sbfnk Jul 21, 2023
8834bfb
fix regional_epinow short timeout tests
sbfnk Jul 21, 2023
c1cb5e8
fix linting issues
sbfnk Jul 22, 2023
8b83593
bump version and add news item
sbfnk Jul 22, 2023
739cc9d
remove stray closing brace
sbfnk Jul 22, 2023
1967db6
remove obsolete check
sbfnk Jul 22, 2023
c87b8fe
Update NEWS.md
seabbs Jul 24, 2023
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fix regional_epinow short timeout tests
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@sbfnk
sbfnk committed Jul 22, 2023
commit 8834bfbf9f068ee595253451b635e8f686173c81
20 changes: 10 additions & 10 deletions tests/testthat/test-regional_epinow.R
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Original file line number Diff line number Diff line change
Expand Up @@ -51,8 +51,8 @@ test_that("regional_epinow produces expected output when run with default settin
})

test_that("regional_epinow runs without error when given a very short timeout", {
expect_error(
regional_epinow(
output <- capture.output(suppressMessages(
out <- regional_epinow(
reported_cases = cases,
generation_time = generation_time_opts(generation_time),
delays = delay_opts(reporting_delay),
Expand All @@ -62,11 +62,11 @@ test_that("regional_epinow runs without error when given a very short timeout",
control = list(adapt_delta = 0.8),
max_execution_time = 1
), logs = NULL, verbose = FALSE
),
NA
)
expect_error(
regional_epinow(
)
))
expect_true(all(vapply(out$regional, function(x) !is.null(x$error), TRUE)))
output <- capture.output(suppressMessages(
out <- regional_epinow(
reported_cases = cases,
generation_time = generation_time_opts(generation_time),
delays = delay_opts(reporting_delay),
Expand All @@ -76,9 +76,9 @@ test_that("regional_epinow runs without error when given a very short timeout",
control = list(adapt_delta = 0.8),
max_execution_time = 1, future = TRUE
), logs = NULL, verbose = FALSE
),
NA
)
)
))
expect_true(all(vapply(out$regional, function(x) !is.null(x$error), TRUE)))
})


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