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Merged
merged 12 commits into from
Oct 25, 2023
Merged

Update phi parameterisation #487

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85d5563
Update observation_model.stan
seabbs Oct 24, 2023
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Update NEWS.md
seabbs Oct 24, 2023
7b99861
Update inst/stan/functions/observation_model.stan
seabbs Oct 24, 2023
38a520a
Update inst/stan/functions/observation_model.stan
seabbs Oct 24, 2023
bb5f8aa
Update inst/stan/functions/observation_model.stan
seabbs Oct 24, 2023
e63595b
Update inst/stan/functions/observation_model.stan
seabbs Oct 24, 2023
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Update inst/stan/functions/observation_model.stan
seabbs Oct 24, 2023
9505d04
Update inst/stan/functions/observation_model.stan
seabbs Oct 24, 2023
66808b8
Update inst/stan/functions/observation_model.stan
seabbs Oct 24, 2023
c64d812
sqrt_phi -> dispersion
seabbs Oct 24, 2023
62b5b8e
Catch another sqrt_phi
seabbs Oct 24, 2023
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Update NEWS.md
seabbs Oct 24, 2023
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Update inst/stan/functions/observation_model.stan 
Co-authored-by: Sebastian Funk <sebastian.funk@lshtm.ac.uk>
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@seabbs @sbfnk
seabbs and sbfnk authored Oct 24, 2023
commit 66808b82ef6408393a03bf78b8669980ad0436e7
2 changes: 1 addition & 1 deletion inst/stan/functions/observation_model.stan
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Expand Up @@ -95,7 +95,7 @@ array[] int report_rng(vector reports, array[] real rep_phi, int model_type) {
array[t] int sampled_reports;
real dispersion = 1e5;
if (model_type) {
sqrt_phi = 1 / pow(rep_phi[model_type], 2);
dispersion = 1 / pow(rep_phi[model_type], 2);
}

for (s in 1:t) {
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