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Split prior infections and growth calculation into separate function #888

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Merged
merged 6 commits into from
Dec 12, 2024
Merged

Split prior infections and growth calculation into separate function #888

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a0d3ffc
Split prior infections and growth calculation into separate function
jamesmbaazam Dec 11, 2024
e3980e5
Add tests
jamesmbaazam Dec 11, 2024
340e570
Move function to create.R
jamesmbaazam Dec 12, 2024
90cc4a3
Rename function
jamesmbaazam Dec 12, 2024
44ddef8
Rename test script and function
jamesmbaazam Dec 12, 2024
00a296a
Add NEWS item
jamesmbaazam Dec 12, 2024
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@jamesmbaazam
jamesmbaazam committed Dec 12, 2024
commit 00a296a3bc3b10d7cc4ad14fe61c1c388e4fcb3e
1 change: 1 addition & 0 deletions NEWS.md
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## Package changes

- The internal functions `create_clean_reported_cases()` has been broken up into several functions, with relevant ones `filter_leading_zeros()`, `add_breakpoints()` and `apply_zero_threshold()` exposed to the user. By @sbfnk in #884 and reviewed by @seabbs and @jamesmbaazam.
- The step of estimating early infections and growth in the internal function `create_stan_data()` has been separated into a new internal function `estimate_early_dynamics()`. By @jamesmbaazam in #888 and reviewed by @sbfnk.

## Documentation

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