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Use natural parameters when specifying uncertain distributions #893

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Merged
merged 18 commits into from
Dec 17, 2024
Merged

Use natural parameters when specifying uncertain distributions #893

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457d4ac
Use natural parameters in all examples
jamesmbaazam Dec 12, 2024
9b9dbf1
Add NEWS item
jamesmbaazam Dec 12, 2024
ed39b8d
Remove statement about warning
jamesmbaazam Dec 12, 2024
19be97e
Remove use of Fixed() for specifying fixed parameters
jamesmbaazam Dec 12, 2024
36cff84
Redocument
jamesmbaazam Dec 12, 2024
172743a
Fix missing comma
jamesmbaazam Dec 12, 2024
e049f74
Change uncertain parameters to numeric
jamesmbaazam Dec 13, 2024
bd75998
Revert to using mean and sd
jamesmbaazam Dec 13, 2024
4960f7f
Use numeric instead of uncertain parameters
jamesmbaazam Dec 13, 2024
a34e03d
Revert indentation
jamesmbaazam Dec 13, 2024
d5c7612
Use natural parameters to specify uncertain distributions
jamesmbaazam Dec 13, 2024
78f0800
Redoc after revert to mean and sd for numeric parameters
jamesmbaazam Dec 13, 2024
3a534bc
Update NEWS
jamesmbaazam Dec 13, 2024
6b0140f
Fix example in collapse.dist_spec
jamesmbaazam Dec 13, 2024
07e94bc
Align code with text
jamesmbaazam Dec 13, 2024
d9265c3
Use natural params of Gamma in vignette example
jamesmbaazam Dec 13, 2024
2f2b3bb
Update LogNormal example
jamesmbaazam Dec 17, 2024
89e89a7
Generate docs
jamesmbaazam Dec 17, 2024
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Fix missing comma
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@jamesmbaazam
jamesmbaazam committed Dec 13, 2024
commit 172743a95bcdfde34a4e7865fe2631a9308a395b
12 changes: 6 additions & 6 deletions R/regional_epinow.R
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Original file line number Diff line number Diff line change
Expand Up @@ -83,12 +83,12 @@
#' prior = LogNormal(
#' meanlog = 2,
#' sdlog = 0.2
#' ),
#' stan = stan_opts(
#' samples = 100, warmup = 200
#' ),
#' verbose = interactive()
#' )
#' )
#' ),
#' stan = stan_opts(
#' samples = 100, warmup = 200
#' ),
#' verbose = interactive()
#' )
#' options(old_opts)
#' }
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12 changes: 6 additions & 6 deletions man/regional_epinow.Rd
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