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Statens Serum Institut

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  1. CD-MRG-metabolomics_summerschool_2023 CD-MRG-metabolomics_summerschool_2023 Public

    This repository contains teaching material for the 3rd International Summer School on Non-Targeted Metabolomics Data Mining for Biomedical Research

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  2. serum_readfilter serum_readfilter Public

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  3. microreact_integration microreact_integration Public

    Python code for integrating with Microreact

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  4. bifrost bifrost Public

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  5. diseasy diseasy Public

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  6. SCDB SCDB Public

    R package for maintaining data bases with slowly-changing-dimensions

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  • sofi_core_gitops Public

    GitOps configuration for the sofi_core Kubernetes cluster

    ssi-dk/sofi_core_gitops’s past year of commit activity
    0 2 0 0 Updated Apr 29, 2025
  • sofi_core Public
    ssi-dk/sofi_core’s past year of commit activity
    Python 1 1 3 28 Updated Apr 29, 2025
  • ssi_analysis_result_parsers Public

    Data wranglers for species specific pipelines to extract results for downstream databases

    ssi-dk/ssi_analysis_result_parsers’s past year of commit activity
    Jupyter Notebook 0 MIT 0 0 0 Updated Apr 29, 2025
  • ssi_analysis_utility Public

    Package for the species specific analysis WP6 MicrobeSeq

    ssi-dk/ssi_analysis_utility’s past year of commit activity
    Python 1 MIT 0 3 5 Updated Apr 25, 2025
  • cdiff_fbi Public

    Typing of Clostridioides difficile isolates using NGS data (reads and contigs) based on tandem repeat loci (TR6, TR10), and toxin genes (cdtA, cdtB, tcdA, tcdB, tcdC).

    ssi-dk/cdiff_fbi’s past year of commit activity
    ASP.NET 1 MIT 0 0 0 Updated Apr 25, 2025
  • bio_api Public

    REST API for triggering bioinformatic calculations from SOFI

    ssi-dk/bio_api’s past year of commit activity
    Python 0 0 0 0 Updated Apr 24, 2025
  • bifrost_reporter Public

    Bifrost reporter for EQA

    ssi-dk/bifrost_reporter’s past year of commit activity
    Python 0 MIT 0 0 0 Updated Apr 15, 2025
  • aedseo Public

    Automated and Early Detection of Seasonal Epidemic Onset and Burden Levels

    ssi-dk/aedseo’s past year of commit activity
    R 1 0 3 1 Updated Apr 10, 2025
  • microbeseq_nbdev_augment Public

    Files to assist in setup of nbdev

    ssi-dk/microbeseq_nbdev_augment’s past year of commit activity
    Jupyter Notebook 0 MIT 1 0 0 Updated Apr 7, 2025
  • bifrost_chewbbaca Public
    ssi-dk/bifrost_chewbbaca’s past year of commit activity
    Python 1 MIT 1 0 0 Updated Apr 2, 2025
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