satijalab / seurat
R toolkit for single cell genomics
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R toolkit for single cell genomics
Inferring CNV from Single-Cell RNA-Seq
R toolkit for inference, visualization and analysis of cell-cell communication from single-cell data
An implementation of the Grammar of Graphics in R
R package for detecting doublets in single-cell RNA sequencing data
Simple Features for R
R's data.table package extends data.frame:
Make Complex Heatmaps
renv: Project environments for R.
Accurate sample inference from amplicon data with single nucleotide resolution
Interfaces for HDF5-based Single Cell File Formats
Tools to make an R developer's life easier
phyloseq is a set of classes, wrappers, and tools (in R) to make it easier to import, store, and analyze phylogenetic sequencing data; and to reproducibly share that data and analysis with others. See the phyloseq front page:
R Interface to Python
RStan, the R interface to Stan
🎓 A collection of interactive courses for the swirl R package.