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44 public repositories
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Byte-aligned, efficient lossless packer that is optimized for fast decompression on 8-bit micros
Free open-source compressor for apLib with 5-7% better ratios
Binary delta tools and library
msufsort parallel suffix array construction algorithm
Collection of Suffix Array Construction Algorithms (SACAs)
Updated
Mar 29, 2019
Shell
Inducing enhanced suffix arrays for string collections [DCC'16, TCS 2017]
Generalized enhanced suffix array construction in external memory [CPM'13, AMB 2017]
Fast deflate implementation with zopfli-like ratios and a streaming API
Collection of techniques for (binary) string searching
Updated
Nov 23, 2019
Rust
Induced Suffix Array and LCP construction based on the SAIS algorithm.
Optimal suffix sorting and LCP array construction for constant alphabets [IPL 2017]
A lightweight suffix-sorting library enhanced with LCP construction
fast and memory saving bsdiff 4.x compatible delta compressor and patcher
Updated
Apr 25, 2020
Rust
suffix array construction and searching algorithms for in-memory binary data.
Updated
Apr 25, 2020
Rust
Manber&Myers's Suffix Array implemented in Go.
Data Structures naively implemented in Kotlin for learning purpose
Updated
Feb 26, 2020
Kotlin
Updated
Apr 16, 2020
Java
Computing the Lyndon Array in linear time [JDA 2018, SPIRE'19]
gsufsort: building suffix arrays, LCP-arrays and BWTs for string collections
collection of stuffs built from scratch using c++
DNA palindrome may have significant role in DNA replication that are found frequently in human cancer cells. Data Structures - Suffix Array, Longest Common prefix Array.
Updated
Nov 8, 2019
Groovy
Algorithms and Data Structures course at ITMO University
Practices of Algorithm for hard problems
Updated
Feb 10, 2020
Java
Step is a C++17, header-only library of STL-like algorithms and data structures
C++ Tandem Repeats Detector -- Spring 2020 Independent Study Class in the Computer Science Department of Brooklyn College
Text compression by abbreviation
Updated
Mar 23, 2020
Python
A string manipulation library in Golang
Sternum is a python package to map next generation sequencing reads to a reference genome using optimized methods
Updated
May 26, 2020
Python
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