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clustering-algorithm

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Ariel505
Ariel505 commented Sep 10, 2019

Hello,
I am building a QGIS plugin and would like to add hdbscan in methods. But when I import with OSGEO4W shell it failed at this line:
File "C:\OSGeo4W\apps\Python37\lib\site-packages\hdbscan-0.8.22-py3.7-win32.egg\hdbscan_init_.py", line 1, in
from .hdbscan_ import HDBSCAN, hdbscan
File "C:\OSGeo4W\apps\Python37\lib\site-packages\hdbscan-0.8.22-py3.7-win32.egg\hdbscan\h

sharma-ji
sharma-ji commented Jan 11, 2019

I am trying to implement hamming distance for categorical data, but I am getting an error

`C:\Users\Mukul.Sharma\AppData\Local\Continuum\Anaconda3\lib\site-packages\kmodes\kmodes.py in init_huang(X, n_clusters, dissim)
39 # so set centroid to closest point in X.
40 for ik in range(n_clusters):
---> 41 ndx = np.argsort(dissim(X, centroids[ik]))
42 # We

mmokrejs
mmokrejs commented Mar 15, 2016

Hi,
there is http://weizhong-lab.ucsd.edu/cd-hit/wiki/doku.php?id=cd-hit-auxtools-manual but it seems there is no documentation like this in current cd-hit tree (4.6.5).
Further, there used to be http://weizhong-lab.ucsd.edu/softwares/cd-hit-454/cdhit-cluster-consensus-2013-03-27.tgz but I don't see it in current cd-hit tree. Does it really export consensus sequence of each cluster? How does i

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