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biomedical-data-science

Here are 66 public repositories matching this topic...

shreyaspadhy / UNet-Zoo

A collection of UNet and hybrid architectures in PyTorch for 2D and 3D Biomedical Image segmentation

deep-learning cnn pytorch lstm rnn unet biomedical-data-science imagesegmentation bdclstm kunet

Updated Aug 2, 2018
Python

blengerich / CompBioDatasetsForMachineLearning

A Curated List of Computational Biology Datasets Suitable for Machine Learning

machine-learning computational-biology dataset curated-list datasets biomedical-data-science computational-biology-datasets

Updated Jan 10, 2022

BorgwardtLab / S3M

A software package for statistically significant shapelet mining

time-series biomedical time-series-analysis shapelets biomedical-data-science time-series-analysis-tool significant-pattern-mining

Updated Sep 23, 2021
C++

ncbi-nlp / PubMed-Best-Match

Machine-learning based pipeline relying on LambdaMART currently used in PubMed for relevance (Best Match) searches

machine-learning text-mining feature-engineering biomedical-data-science

Updated Apr 30, 2018
Python

bio-ontology-research-group / opa2vec

Turning Ontologies Plus Annotation Properties into Vectors

machine-learning ontology artificial-intelligence biomedical-data-science

Updated Sep 26, 2020
Groovy

AnthonyMRios / adversarial-relation-classification

Unsupervised domain adaptation method for relation extraction

nlp machine-learning natural-language-processing bioinformatics nlp-machine-learning relation-extraction biomedical-data-science

Updated Jul 16, 2018
Python

PingjunChen / GradingKneeOA

Knee Osteoarthritis Analysis with X-ray Images using CNN

deep-learning biomedical-data-science yolov2 x-ray-images cnn-classification grading-system knee-joints knee-osteoarthritis-analysis kl-grading

Updated Feb 9, 2022
Python

hms-dbmi / EHRtemporalVariability

R package for delineating temporal dataset shifts in Eletronic Health Records

visualization time biomedical-informatics data-quality electronic-health-records biomedical-data-science variability data-quality-monitoring dataset-shifts

Updated May 31, 2021
R

jakelever / knowledgediscovery

Analysis code for knowledge discovery project

data-science big-data knowledge-discovery biomedical-data-science literature-mining

Updated Sep 25, 2018
Python

epigen / atacseq_pipeline

Ultimate ATAC-seq Data Processing & Analysis Workflow. A Snakemake implementation of the BSF's ATAC-seq Data Processing Pipeline extended by downstream processing and unsupervised analyses steps using bash, python, and R. Reproducibility is ensured by using conda and Singularity.

python bash workflow bioinformatics snakemake r pipeline ngs atac-seq biomedical-data-science

Updated Mar 11, 2022
Python

meta

mida-project / meta

📎 About MIDA Project

machine-learning deep-neural-networks deep-learning deep-reinforcement-learning biomedical-informatics assistant medical-imaging cancer-imaging-research user-interface user-experience human-computer-interaction biomedical user-centered-design cancer-research biomedical-image-processing biomedical-engineering medical-image-processing health-informatics biomedical-data-science medical-assistant

Updated Dec 11, 2020

aangelopoulos / im2im-uq

Image-to-image regression with uncertainty quantification in PyTorch. Take any dataset and train a model to regress images to images with rigorous, distribution-free uncertainty quantification.

machine-learning computational-biology pytorch uncertainty mri unet microscopy uncertainty-quantification uncertainty-estimation biomedical-image-processing computational-imaging biomedical-data-science quantile-regression image-to-image-translation

Updated Feb 11, 2022
Python

hisunjiang / Public-datasets-of-BCI

Popular public datasets of BCI

eeg bci biomedical-data-science

Updated Dec 22, 2021

liashchynskyi / neuronix

Program module for parallel training of convolutional neural networks using DL4J & CUDA 🦄

data-science medicine material-design javafx cuda parallelism nvidia machinelearning deeplearning convolutional-neural-networks biomedical dl4j neuralnetworks deeplearning4j biomedical-data-science tneu fcit liashchynskyi

Updated Jul 18, 2018
Java

victorvicpal / biofes

Biomedical Feature Selection for Machine Learning Models

machine-learning inferential-statistics multivariate-statistics biomedical-data-science

Updated May 14, 2021
Python

bccummings / acq-tools

Toolkit for analyzing physiologic data collected via Biopac AcqKnowledge software.

data-acquisition research-data-management biomedical-engineering physiology health-informatics biomedical-data-science biopac

Updated Nov 30, 2020
Python

FAIRplus / Data-Maturity

FAIR Dataset Maturity model

fair lifescience biomedical-data-science maturity-model fair-data

Updated Mar 16, 2022
SCSS

i6092467 / pediatric-appendicitis-ml

This repository holds the code for the study on using ML to predict the diagnosis, management, and severity of pediatric appendicitis

machine-learning classification medical-informatics biomedical-data-science decision-support-systems

Updated Oct 23, 2021
R

Sorelz / Kaggle_MSK

Project for Kaggle competition on spotting cancer by NLP - coworking with Rafi Zonenashvili

nlp machine-learning biology kaggle biomedical-data-science

Updated Jan 31, 2018
Jupyter Notebook

iliox / NLP-term-project

NLP Term Project for Autumn 2019. Named Entity Recognition in Biomedical Corpus.

nlp deep-learning ner flair bert biomedical-data-science bilstm-crf elmo

Updated Dec 3, 2019
Python

EHRsourceVariability

carsaesi / EHRsourceVariability

Measuring and visualizing biomedical data variability/heterogeneity across data sources

biomedical-informatics data-quality electronic-health-records biomedical-data-science heterogeneity frailty variability biomedical-data dataset-shifts

Updated May 21, 2019
R

a-r-j / DrugTranslatoR

Sponsor

R package for translating between drug identifiers using the Chemical Translation Service (CTS)

r chemistry cheminformatics chemical biomedical-informatics drug-discovery drug-repurposing r-package identifiers biomedical-data-science drug-development chemical-translation-service chemical-identifiers

Updated Feb 19, 2019
R

covid19sdtool

carsaesi / covid19sdtool

R code for the discovery of COVID-19 subgroups by symptoms and comorbidities.

biomedical-informatics data-quality biomedical-data-science heterogeneity frailty variability subgroup-analysis covid-19 covid19 subgroup-discovery

Updated Nov 30, 2020
HTML

snikol03 / Markov-Chain-Project

Perl implementation of Markov Chain for the course BIO331

Updated May 3, 2017
Perl

fredhutchio / coding_for_cancer

An introduction to computational thinking and performing biomedical research with R for high school students

training education computational-biology highschool biomedical computational-thinking biomedical-data-science

Updated Mar 19, 2021

Taneja24 / Semantic-Segmentation-of-Microscopy-Cell-Images

Identify microscopy cells in biomedical images using semantic segmenting with U-Net Architecture

artificial-intelligence healthcare semantic-segmentation biomedical-data-science u-net

Updated Aug 24, 2020
Jupyter Notebook

deep_depression_detector

liang6261515 / deep_depression_detector

Deep learning model of depression detection from activity sensor data

deep-learning tensorflow signal-processing keras cnn depression mental-health depressed biomedical-data-science mental-health-awareness mental-disorder

Updated Dec 17, 2021
Python

rcv911 / coherence-function

analysis eeg eeg-signals coherence eeg-data biomedical-engineering biomedical-data-science coherence-function

Updated Dec 24, 2017
Python

akatrib / sys-bio

Curated list of analysis pipelines for biological & clinical interpretation of data-driven findings

bioinformatics systems-biology bioinformatics-pipeline network-analysis pathway-analysis enrichment-analysis protein-protein-interaction co-expression biomedical-data-science omics-data-integration pathway-enrichment-analysis

Updated Nov 19, 2020
R

rcv911 / spectrum-average

EEG spectrum mean of 84 records

spectrum eeg eeg-signals eeg-data biomedical-engineering eeg-analysis biomedical-data-science

Updated Dec 24, 2017
Python

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