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Aug 6, 2021 - Groovy
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nextflow
Here are 401 public repositories matching this topic...
A DSL for data-driven computational pipelines
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hello
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dataflow
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A curated collections of Nextflow implementation patterns -- http://nextflow-io.github.io/patterns/index.html
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May 14, 2020 - Nextflow
Detect germline or somatic variants from normal or tumour/normal whole-genome or targeted sequencing
docker
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cancer
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badge
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scilifelab
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gitter-link
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Jan 27, 2020 - Nextflow
Analysis pipeline to detect germline or somatic variants (pre-processing, variant calling and annotation) from WGS / targeted sequencing
docker
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bioinformatics
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annotation
genomics
nextflow
cancer
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containers
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nf-core
gatk4
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Aug 6, 2021 - Nextflow
A flexible pipeline for complete analysis of bacterial genomes
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Aug 6, 2021 - HTML
Our VM/Docker sharing infrastructure and management component
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Aug 6, 2021 - Java
ChIP-seq peak-calling, QC and differential analysis pipeline.
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Jul 28, 2021 - Nextflow
GATK RNA-Seq Variant Calling in Nextflow
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Nov 1, 2020 - Nextflow
A graphical user interface for distributed data processing of high throughput genomics
rna-seq
pipeline
nextflow
drag
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chip-seq
atac-seq
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workflows
amazon-cloud
dolphinnext
share-pipelines
drop-interface
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Jul 28, 2021 - JavaScript
Methylation (Bisulfite-Sequencing) analysis pipeline using Bismark or bwa-meth + MethylDackel
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Jul 27, 2021 - Nextflow
16S rRNA amplicon sequencing analysis workflow using QIIME2
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Aug 6, 2021 - Nextflow
Nextflow pipeline for analysis of direct RNA Nanopore reads
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Aug 6, 2021 - HTML
RNA-seq analysis pipeline for detection gene-fusions
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Jul 29, 2021 - Nextflow
WtP: Phage identification via nextflow and docker or singularity
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Jun 16, 2021 - Nextflow
ashildv
commented
Jan 7, 2021
Hi there,
I wonder if it would be possible to add a feature in the pipeline allowing libraries made with different adapter sequences to be processed in the same run.
For example, my colleagues and I are often working with a mixture of Illumina and BGI (4 channel) sequencing data and it would be cool to be able run these data together, instead of having to run adapter removal separately for eac
Assembly and binning of metagenomes
workflow
bioinformatics
nanopore
pipeline
annotation
nextflow
assembly
metagenomics
binning
metagenomes
nanopore-sequencing
nf-core
long-read-sequencing
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Jul 29, 2021 - Nextflow
Nextflow RNA-Seq Best Practice analysis pipeline, used at the SciLifeLab National Genomics Infrastructure.
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Aug 20, 2018 - Groovy
Assembly and intrahost/low-frequency variant calling for viral samples
workflow
nanopore
virus
pipeline
nextflow
assembly
metagenomics
variant-calling
illumina
oxford-nanopore
amplicon
viral
ont
nf-core
long-read-sequencing
artic
covid-19
covid19
sars-cov-2
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Jul 29, 2021 - Nextflow
Multi-sample somatic variant caller
docker
bam-files
pipeline
nextflow
ngs
regression
variants
somatic-mutations
samtools
negative-binomial-regression
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Jun 15, 2020 - R
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I think it would be good to have a module for gatk4