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A DSL for data-driven computational pipelines
Updated
May 12, 2022
Groovy
a pytorch lib with state-of-the-art architectures, pretrained models and real-time updated results
Updated
Dec 8, 2020
Python
Tools for computation on batch systems
🚀 R package future.batchtools: A Future API for Parallel and Distributed Processing using batchtools
EnsEMBL Hive - a system for creating and running pipelines on a distributed compute resource
An easy to use and comprehensive python package which aids in the analysis and visualization of orthologous genes. 🐵
Updated
Feb 25, 2022
Python
An information-theoretic pipeline for methylation analysis of WGBS data
Updated
Apr 9, 2019
MATLAB
Intro how to install and use SGE(Sun Grid Engine) on ConteOS 7
Longbow is a tool for automating simulations on a remote HPC machine. Longbow is designed to mimic the normal way an application is run locally but allows simulations to be sent to powerful machines.
Updated
Jan 13, 2020
Python
Module to create DAG Task and Manage Task on SGE
Updated
Feb 1, 2019
Python
🚀 R package: future.BatchJobs: A Future API for Parallel and Distributed Processing using BatchJobs [Intentionally archived on CRAN on 2021-01-08]
xGAP is an efficient, modular, extensible and fault-tolerant pipeline for massively parallelized genomic analysis/variant discovery from next-generation DNA sequencing data.
Updated
Oct 21, 2020
Python
A simple job manager for PBS (Portable Batch System)
Updated
Sep 14, 2017
Python
Utilities to support interacting with multiple HPC clusters
Updated
Oct 21, 2021
Python
🚀 R package future.clustermq: A Future API for Parallel Processing using 'clustermq'
runjob is a program for managing a group of related jobs running on a compute cluster
Updated
May 7, 2022
Python
Sistema de Gerenciamento de Estágio - Blitz - CTI
Updated
Mar 15, 2020
HTML
A cli for running multiple qsub jobs with HTSeq's htseq-count on a cluster.
Updated
Feb 25, 2022
Python
Utility modules for Python
Updated
Sep 24, 2019
Python
Execution and management of Docker containers in batch systems.
Updated
May 31, 2017
Python
Some scripts for managing nodes and jobs on SGE
Updated
May 8, 2019
Python
Running cellprofiler on eddie3 / SGE clusters
Updated
Jun 24, 2021
Python
A wrapper for the various MPI implementations on Legion to abstract them so that users don't need to know all the options.
Updated
Oct 28, 2020
Shell
An R package to submit arbitrary jobs to a remote SGE cluster
This repository contains a subset of the FieldTrip code related to distributed computing
Updated
Feb 6, 2022
MATLAB
Custom terminal setup for Linux and Mac
Updated
Nov 10, 2020
Shell
A workshop: using High Performance Computing at the University of Canterbury
Easily submit and query output of HPC jobs (MPI, SMP) using predefined templates and helpers in (Son of) Grid Engine.
Updated
May 26, 2020
Shell
Web-based front-end for Slurm or Grid Engine
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Just like
parallel::makePSOCKCluster()
sets up aSOCKcluster
object ofSOCKnode
workers, I think it would not be too complicated(*) to provideCMQcluster
andCMQnode
alternatives for clustermq.For instance,
(*) Roughly, S3 methods for generic functions such a