nonlinear-dynamics

and link to Github discussions Q&A.

Super straightforward, kinda mandatory, but I don't think we should count it as a breaking change. We're literally changing the LightGraphs name with Graphs.jl. See https://discourse.julialang.org/t/lightgraphs-jl-transition/69526 for more details.

remove all places where node_t is used

I'm reading again the Nonlinear Time Series Analysis textbook by Kantz & Schreiber. In section 6.5 they describe a rather straightforward method for estimating a good value of the Theiler window. It is a method by Provenzale et al

Provenzale, A., Smith, L. A., Vio, R. &Murante, G. (1992). Distinguishing between low-dimensional dynamics and randomness in measured time series. Physica D, 58, 31

Following on from #67 I I think it would be a very good thing if MuMoT models could be created and referenced in Notebooks without using Notebook cell execution numbers. At present the example Notebooks contain cells like:

%%model
$
U -> A : g_A
U -> B : g_B
A -> U : a_A
B -> U : a_B 
A + U -> A + A : r_A
B + U -> B + B : r_B
A + B -> A + U : s
A + B -> B + U : s
$

then
`