Here are
32 public repositories
matching this topic...
Community-curated list of software packages and data resources for single-cell, including RNA-seq, ATAC-seq, etc.
Updated
Mar 23, 2021
HTML
😎 A curated list of software and resources for exploring and visualizing (browsing) expression data 😎
AltAnalyze is a multi-functional and easy-to-use software package for automated single-cell and bulk gene and splicing analyses. Easy-to-use precompiled graphical user-interface versions available from our website.
Updated
Jul 25, 2021
Python
pcaExplorer - Interactive exploration of Principal Components of Samples and Genes in RNA-seq data
Enjoy your transcriptomic data and analysis responsibly - like sipping a cocktail
GREIN : GEO RNA-seq Experiments Interactive Navigator
Updated
May 28, 2019
HTML
Estimation of Promoter Activity from RNA-Seq data
Interactive R package to quantify, analyse and visualise alternative splicing
🔬 A multi-method comparative bioinformatics pipeline to detect and study circRNAs from RNA-seq data
Exhaustive capture of biological variation in RNA-seq data through k-mer decomposition.
The code and analyses accompanying the manuscript “MetaMap: An atlas of metatranscriptomic reads in human disease-related RNA-seq data”.
Updated
Nov 28, 2018
HTML
Collection of scripts to map eQTL with RNAseq Data and Genotype by Sequencing
DEWE (Differential Expression Workflow Executor) is an open source application for easily executing Differential Expression analyses in RNA-Seq data.
Updated
Feb 14, 2019
Java
🌻 View single-cell RNA-seq and mass cytometry data in synovial tissues from patients with RA or OA.
M5NRv2 -- non-redundant protein and rRNA database integration
Updated
Nov 15, 2018
Perl
Useful R functions for Multi-omics analyses
RNA-Seq tutorial materials - slides, training data, code lines
Updated
Dec 13, 2017
HTML
Performed a differential gene expression analysis with RNA-seq that compares the expression in human control breast cancer cell lines with lines treated by silencing the NRDE2 gene. A Salmon + tximport + DESeq2 workflow was conducted to pursue this.
Updated
Aug 28, 2020
Shell
RNAdetector: a free user-friendly and stand-alone software for RNA-Seq data analysis
Updated
Jul 1, 2021
JavaScript
Epigenomics workflow system for the semi-automated analysis of NGS data
Updated
Feb 27, 2020
Jupyter Notebook
Scripts used to analyze tomato meta-transcriptome from short-read host RNA-seq data in Chialva et al. (2020)
Predicting NCSU Coastal Breeding Values using RNA Seq data
This is a repository for a pipeline used to identify imprinted genes or allele specific expressions using Illumina next generation sequencing (NGS) platform. This repository contains a work in progress to identify imprinted genes in polyploid species.
Build highly accurate transcripts from long-read RNA data
Updated
Jul 30, 2020
Python
Updated
Jan 20, 2020
Jupyter Notebook
Updated
May 6, 2021
JavaScript
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