#
openslide
Here are 31 public repositories matching this topic...
Python package for dealing with whole slide images (.svs) for machine learning, particularly for fast prototyping. Includes patch sampling and storing using OpenSlide. Patches may be stored in LMDB, HDF5 files, or to disk. It is highly recommended to fork and download this repository so that personal customisations can be made for your work.
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Apr 25, 2020 - Jupyter Notebook
Full package for applying deep learning to virtual slides.
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Sep 7, 2018 - Python
slide-images
medical-imaging
openslide
whole-slide-imaging
computational-pathology
pathology-image
wsis
whole-slide-image
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Mar 12, 2022 - Python
Digital Pathology AI
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Dec 31, 2020 - JavaScript
a toolbox for manipulation of digital pathology slides and annotations
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Aug 11, 2020 - Jupyter Notebook
A pyqt5 widget for viewing whole-slide images with Openslide
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Feb 3, 2018 - Python
Simple library for preprocessing histopathological whole-slide images (WSI) into tiles (a.k.a. patches) towards deep learning
pytorch
libvips
preprocessing
fastai
openslide
pathology
whole-slide-imaging
wsi
histopathology
pyvips
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Sep 3, 2020 - Python
LabelSlide is a slide annotation tool and label object bounding boxes in virtual slides (generally used in pathology)
deep-learning
annotations
python3
openseadragon
openslide
digital-pathology
pathology
labeltool
pathology-image
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Jun 28, 2021 - JavaScript
European Computer Vision Library (ECVL). A general-purpose computer vision library developed to support healthcare use cases within the DeepHealth project, with the aim of facilitating the integration of existing state-of-the-art libraries.
visual-studio
computer-vision
cpp
computer-graphics
image-processing
dicom
gpu-acceleration
openslide
fpga-acceleration
ecvl-installation
imagewatch-plugin
ecvl
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Apr 29, 2022 - C++
Preprocessing module for large histological images
medical-imaging
cut
preprocess
openslide
medical-image-processing
tissue-classification
pathology
medical-image-analysis
histological-images
pathology-image
tissue-analysis
histological-slides
slide-image
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Oct 13, 2021 - Python
Tools for whole slide image (WSI) processing. Especially for (pairwise) patch extraction, annotation parsing and data preparation for deep learning purposes.
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Feb 14, 2022 - Python
A plugin for TensorBoard to show WSI images. The plugin is based on Deep Zoom Image (DZI).
visualization
plugin
viewer
tensorboard
openslide
dzi
deepzoom
wsi
tensoflow
histopathology
wsi-images
wsi-viewer
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Feb 6, 2021 - JavaScript
TensorFlow cunstom runner to read micro images from whole slide images.
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May 14, 2019 - Jupyter Notebook
Convenient interface for generating tiles from Aperio SVS format images
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Jun 4, 2019 - Python
slideToolkit: a free toolset for analyzing wholeslide high-resolution digital histological images.
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Apr 14, 2022 - Shell
3D visualisation using Inviwo and OpenSlide
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Jul 29, 2021 - C++
A pyqt5 widget for viewing collection of whole-slide images with Openslide
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Feb 3, 2018 - Python
A pyqt5 GUI for CBIR in whole-slide images with Openslide
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Feb 3, 2018 - Python
Digital Open-source pathology tool based on OpenSlide with Manipulation & annotations feature.
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Jan 17, 2022 - Python
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The existing tests should be improved:
TRY_EXPECT_NO_EXCEPTION
,EXERCISE_BASIC_OBJECT_METHODS
, etc.) to avoid boilerplate code.testStatus
in and change its value as tests fail: requires changing the test design).