geometric-deep-learning
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Apr 10, 2022 - HTML
Description
Currently our unit tests are disorganized and each test creates example StellarGraph graphs in different or similar ways with no sharing of this code.
This issue is to improve the unit tests by making functions to create example graphs available to all unit tests by, for example, making them pytest fixtures at the top level of the tests (see https://docs.pytest.org/en/latest/
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Describe the solution you'd like
- inputs for chain selection as a separate .txt file
- Input as list of PDB codes (txt file) rather than PDB directory path
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Motivation
paper "LEARNING TO REPRESENT PROGRAMS WITH GRAPHS" which encode computer programs as graphs, with rich semantic information, however, most code implementation on this dataset VarMisuse is based on TensorFlow, like [tf-gnn-samples](https://github.com/microsof