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sequence-clustering

Here are 10 public repositories matching this topic...

MMseqs2

soedinglab / MMseqs2

MMseqs2: ultra fast and sensitive search and clustering suite

bioinformatics taxonomy metagenomics alignment sequence-clustering profile-search sequence-search linclust mmseqs blast

Updated Jun 2, 2022
C

BioinformaticsToolsmith / MeShClust

MeShClust: an intelligent tool for clustering DNA sequences

bioinformatics clustering sequence-clustering

Updated Jan 14, 2022
C++

millanp95 / DeLUCS

This repository contains all the source files required to run DeLUCS, a deep learning clustering algorithm for DNA sequences.

deep-learning sequence-clustering taxonomic-classification

Updated May 12, 2022
Python

soedinglab / MMseqs

opensource cpp alignment sequence-clustering mmseqs

Updated Sep 19, 2016
C++

BioinformaticsToolsmith / MeShClust2

MeShClust2: Application of alignment-free identity scores in clustering long DNA sequences

bioinformatics sequence-clustering alignment-free alignment-free-algorithm bioinformatics-tool

Updated Jan 14, 2022
C++

bailey-lab / SeekDeep

Bioinformatic Tools for analyzing targeted amplicon sequencing developed by Nicholas Hathaway of Bailey Lab

c-plus-plus bioinformatics sequence-clustering

Updated May 14, 2022
C++

krejciadam / hammock

Cluster up to millions of peptide sequences on shared sequence motifs.

java bioinformatics clustering sequence-clustering multiple-sequence-alignment phage-display

Updated Oct 1, 2018
Java

IBCNServices / MCAppAnalysis

Code to reproduce the experiments and the proposed visualization from 'Data mining in the development of mHealth apps: assessing in-app navigation through Markov Chain analysis'

markov-chain sequence-clustering user-research

Updated May 8, 2019
Jupyter Notebook

wajidarshad / CD-Hit-parse_cluster_file

CD HIT cluster file parser

sequence-clustering sequence-alignment cd-hit

Updated Apr 11, 2018
Python

mooreryan / derep_seqs

Dereplicate long sequences

bioinformatics sequence-clustering substring-search

Updated Mar 25, 2017
C

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