ewels Follow

Phil Ewels ewels

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Lead Developer Advocate at @seqeralabs Author of @MultiQC and co-creator of @nf-core.

514 followers · 28 following

Seqera Labs
Stockholm, Sweden
http://phil.ewels.co.uk
@tallphil

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MultiQC Public

Aggregate results from bioinformatics analyses across many samples into a single report.

Python 847 467
nf-core/tools Public

Python package with helper tools for the nf-core community.

Python 150 98
sra-explorer Public

Web application to explore the Sequence Read Archive.

HTML 133 23
AWS-iGenomes Public

Documentation and description of AWS iGenomes S3 resource.

HTML 82 10
ClusterFlow Public

A pipelining tool to automate and standardise bioinformatics analyses on cluster environments.

Perl 93 26
CPT-Bootstrap-Carousel Public

WordPress plugin which generates a custom post type for choosing images and content. Outputs Bootstrap Image Carousel (slider) HTML from a shortcode.

PHP 51 41

2,632 contributions in the last year

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Activity overview

Contributed to nf-core/tools, nf-core/nf-co.re, ewels/MultiQC and 77 other repositories

Contribution activity

May 2022

Created 155 commits in 12 repositories

Created a pull request in nf-core/tools that received 6 comments

Module linting: refactor parsing of input channel names.

No more split, regexes FTW! Fixes #1542 PR checklist This comment contains a description of changes (with reason) CHANGELOG.md is updated If yo…

+35 −17 • 6 comments

Opened 21 other pull requests in 4 repositories

nf-core/tools 17 merged

Lint for .prettierignore May 20
Shh 🤫 May 16
Dev -> Master v2.4.1 May 16
Fix 2.4 sync May 16
Release review fixes May 16
Bump to v2.5dev May 13
Dev -> Master for v2.4 release May 13
Prepare v2.4 release May 13
Readme badges update May 13
Module linting: Only lint script if there was a script. May 13
Module lint: Allow no input or output in YAML May 13
Module lint styling May 13
Nicer syntax from @Midnighter May 12
Mulled: Nicer CLI output May 12
Mulled: handle invalid versions with a nice error message instead of a traceback May 12
Module linting: recognise shell block. May 12
Make module template and test_yml_builder default commands match. May 12

nf-core/nf-co.re 1 open 1 merged

shy-neon/favtool 1 merged

Tidy up the readme May 21

nf-core/.github 1 merged

Add links to GitHub org names May 13

Reviewed 55 pull requests in 11 repositories

nf-core/nf-co.re 21 pull requests

updating youtube info and removing zoom links for past bytesize talks May 25
Update slack invite link May 19
build(deps): bump moment from 2.29.1 to 2.29.2 May 19
[FIX] Release checklist: Bump-version command changed in new tools release May 19
bytesize talk bactopia May 19
bytesize talk dsl2 coding styles pt1 May 19
bytesize talk nf-core/nanoseq May 19
bytesize talk gitpod.io May 19
bytesize talk nf-core/viralrecon May 19
bytesize talk Resources to learn nextflow May 19
bytesize talk nf-core/proteinfold May 19
bytesize talk nf-core/nascent May 19
bytesize chipseq talk with new date May 19
bytesize talk inkscape and tube map diagrams May 19
Bytesize survey results May 19
changes to outreach team May 16
Editor git packages May 13
modify modules test documentation May 13
Add emojis to make 'please ask first' message more in-your-face May 9
don't add highlight markers inside html tags. May 4
Release checklist bullets to numbers May 3

nf-core/tools 15 pull requests

add isort workflow May 30
fix-broken-linting-tests May 18
Fix header sniffing May 16
Dev -> Master for v2.4 release May 16
Update gitpod image May 13
Document and improve sha_exists() behaviour May 13
fix missing output files in test.yaml May 12
don't updatate sha if the module is not updated May 12
Decode bytes-like object for logging May 12
Replace complex split() by regex May 12
First stab at writing a central utils function for GitHub API calls. May 11
Not all definitions in JSON schema have a "properties", leading to an error May 5
[WIP] improve update.py May 5
replace a weird with a normal dash May 5
add new command modules test May 2

ewels/MultiQC 5 pull requests

Extend kallisto module regex to recognize newer output May 31
Handle too long and low complexity in fastp May 31
added gfastats, genomescope2, merqury, pretext May 30
Fix typo in bcl2fastq.py May 23
Add timezone to reports May 10

ewels/rich-click 4 pull requests

Make _make_command_help remove text indentations with inspect.cleandoc May 16
Fix small typo in README.md May 12
Fix typos May 8
add support of hidden command option May 2

nf-core/configs 3 pull requests

conda-forge/pymdown-extensions-feedstock 2 pull requests

Bump to version 9.4 May 25
[ci skip] adding user @dhirschfeld May 25

FranBonath/nf-co.re 1 pull request

addition to outreach team May 16

nextflow-io/nextflow 1 pull request

Improve missing workflow err message [ci skip] May 14

nf-core/lncpipe 1 pull request

Update nextflow.config May 14

nf-core/atacseq 1 pull request

1.2.2 patch release to fix Conda environment and enable DSL1 in the nextflow.config May 12

nf-core/rnavar 1 pull request

PSEUDO PR - DO NOT MERGE May 4

Created an issue in Textualize/rich-cli that received 5 comments

Exporting colourful SVGs gives XML error

I was wondering if I could get a little help.. 😬 I'm trying to figure out a semi-generalised way for people to generate nice-looking SVGs showing c…

5 comments

Opened 6 other issues in 3 repositories

nf-core/tools 3 open

CLI wizard for building a Nextflow config May 11
Schema: Support nested parameters. May 9
Port schema validation to core Nextflow (plugin) May 5

ewels/MultiQC 2 open

Use XDG_CONFIG_HOME or ~/.config/ May 10
Blacken docs code snippets May 8

ewels/rich-click 1 closed

Typer AttributeError in latest release May 17

103 contributions in private repositories May 2 – May 30