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Updated
Jun 13, 2022 - Python
#
sequencing
Here are 339 public repositories matching this topic...
DeepVariant is an analysis pipeline that uses a deep neural network to call genetic variants from next-generation DNA sequencing data.
science
machine-learning
bioinformatics
deep-learning
genomics
genome
tensorflow
ngs
sequencing
dna
deep-neural-network
deepvariant
An ultra-fast all-in-one FASTQ preprocessor (QC/adapters/trimming/filtering/splitting/merging...)
adapter
quality
bioinformatics
quality-control
filter
ngs
sequencing
overlap
splitting
duplication
umi
trimming
preprocessing
filtering
illumina
fastq
merging
qc
polyg
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May 19, 2022 - C++
Data intensive science for everyone.
docker
science
workflow
bioinformatics
pipeline
genomics
workflow-engine
ngs
sequencing
dna
usegalaxy
hacktoberfest
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Jun 17, 2022 - Python
Analysis of single cell RNA-seq data course
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Apr 11, 2022 - TeX
fast BAM/CRAM depth calculation for WGS, exome, or targeted sequencing
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May 2, 2022 - Nim
Simple & Efficient data access for Scala and Scala.js
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Jun 13, 2022 - Scala
A Python library for creating and manipulating musical patterns, designed for use in algorithmic composition, generative music and sonification. Can be used to generate MIDI events, MIDI files, OSC messages, or custom events.
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Jun 3, 2022 - Python
yannickwurm
commented
Dec 19, 2021
It isn't obvious to users that a search result URL is stable (until deleted).
To make this more obvious, we should add an explicit
Share results section, with a "Copy URL to clipboard" text that does what it says
A repository for setting up a RNAseq workflow
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Apr 10, 2017 - R
Analysis Pipeline for Single Cell ATAC-seq
machine-learning-algorithms
sequencing
epigenetics
bioinformatics-pipeline
single-cell-analysis
single-cell-atac-seq
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Mar 7, 2022 - R
Rapid large-scale prokaryote pan genome analysis
bioinformatics
research
genomics
pathogen
sequencing
next-generation-sequencing
bioinformatics-pipeline
global-health
infectious-diseases
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Apr 21, 2022 - Perl
MiXCR is a universal software for fast and accurate extraction of T- and B- cell receptor repertoires from any type of sequencing data. Free for academic use only.
java
linux
bioinformatics
rna-seq
universal
profit
sequencing
immunology
t-cell
antibody
t-cell-receptor
rep-seq
single-cell
shugay-mikhail
accurate-analysis
dmitriy
paragraphs
10x
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Jun 16, 2022 - Java
Python library to parse, format, validate, normalize, and map sequence variants. `pip install hgvs`
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May 21, 2022 - Python
Finds SNP sites from a multi-FASTA alignment file
bioinformatics
research
genomics
pathogen
sequencing
next-generation-sequencing
bioinformatics-pipeline
global-health
infectious-diseases
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Dec 16, 2020 - C
Artemis is a free genome viewer and annotation tool that allows visualization of sequence features and the results of analyses within the context of the sequence, and its six-frame translation
bioinformatics
research
genomics
pathogen
sequencing
next-generation-sequencing
bioinformatics-pipeline
global-health
infectious-diseases
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Apr 12, 2022 - Java
A tool to circularize genome assemblies
bioinformatics
research
genomics
pathogen
sequencing
next-generation-sequencing
bioinformatics-pipeline
global-health
infectious-diseases
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Nov 2, 2021 - Python
UGENE is free open-source cross-platform bioinformatics software
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Jun 16, 2022 - C++
A minimal and human-readable language and environment for the live coding of algorithmic electronic music.
language
performance
osc
creative-coding
sequencing
live-coding
livecoding
visuals
mercury
algorithmic-composition
sounds
mercury-environment
human-readable-language
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May 6, 2022 - Max
victorlin
commented
Apr 28, 2022
Example: https://docs.nextstrain.org/projects/nextclade/en/stable/user/algorithm/07-quality-control.html
gets rendered as:
<img alt="Identification of private mutations" src="/docs/user/assets/algo_private-muts.png">
and the absolute
t:bug
Type: bug, error, something isn't working
good first issue
Good for newcomers
help wanted
Extra attention is needed
Automatic Annotation on Cell Types of Clusters from Single-Cell RNA Sequencing Data
rna-seq
sequencing
transcriptome
transcriptomics
single-cell
marker-genes
seurat
cluster-annotation
cell-markers
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May 14, 2022 - R
Antimicrobial Resistance Identification By Assembly
bioinformatics
research
genomics
pathogen
sequencing
next-generation-sequencing
bioinformatics-pipeline
global-health
infectious-diseases
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Jan 31, 2022 - Python
Genomics Extension for SQLite
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Mar 28, 2022 - C++
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Oct 13, 2021 - Python
BAM Statistics, Feature Counting and Annotation
alfred
quality
quality-control
sequencing
read-counts
insert-size
coverage-distribution
alignment-metrics
feature-counting
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Jun 1, 2022 - C++
Accurate and flexible loops calling tool for 3D genomic data.
python
bioinformatics
algorithm
pipeline
tool
clustering
ngs
sequencing
example-data
hi-c
dbscan
3d-genome
chia-pet
chromatin-interaction
stripes
hichip
chromatin-loops
chromatin-stripes
loops-calling
trac-looping
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May 19, 2022 - Python
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We need some good graphics for the main sampler screen. This is where you can do rudimentary editing of the samples that are played in the sequencer.
There are two screens. The main screen with the controls: