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Bioinformatics

Bioinformatics is an interdisciplinary field that intersects with biology, computer science, mathematics and statistics. It concerns itself with the development and use of methods and software tools for collecting and analyzing biological data.

Here are 7,747 public repositories matching this topic...

Developer-Y / cs-video-courses

List of Computer Science courses with video lectures.

programming-language computer-science security machine-learning bioinformatics web-development reinforcement-learning computer-vision deep-learning algorithms robotics computational-biology databases embedded-systems systems computational-physics quantum-computing computer-architecture database-systems

Updated Mar 20, 2023

dash

plotly / dash

Sponsor

Data Apps & Dashboards for Python. No JavaScript Required.

Updated Apr 5, 2023
Python

biopython / biopython

Official git repository for Biopython (originally converted from CVS)

python bioinformatics genomics protein-structure dna protein biopython phylogenetics sequence-alignment

Updated Apr 5, 2023
Python

google / deepvariant

DeepVariant is an analysis pipeline that uses a deep neural network to call genetic variants from next-generation DNA sequencing data.

science machine-learning bioinformatics deep-learning genomics genome tensorflow ngs sequencing dna deep-neural-network deepvariant

Updated Mar 17, 2023
Python

seandavi / awesome-single-cell

Community-curated list of software packages and data resources for single-cell, including RNA-seq, ATAC-seq, etc.

Updated Mar 19, 2023

danielecook / Awesome-Bioinformatics

Sponsor

A curated list of awesome Bioinformatics libraries and software.

awesome bioinformatics awesome-list

Updated Jan 28, 2023

nextflow

nextflow-io / nextflow

A DSL for data-driven computational pipelines

docker groovy hello aws cloud bioinformatics pipeline nextflow hpc reproducible-research workflow-engine slurm pipeline-framework sge singularity reproducible-science dataflow singularity-containers

Updated Apr 5, 2023
Groovy

bioconda / bioconda-recipes

Conda recipes for the bioconda channel.

bioinformatics conda hacktoberfest package-management

Updated Apr 5, 2023
Shell

OpenGene / fastp

An ultra-fast all-in-one FASTQ preprocessor (QC/adapters/trimming/filtering/splitting/merging...)

adapter quality bioinformatics quality-control filter ngs sequencing overlap splitting duplication umi trimming preprocessing filtering illumina fastq merging qc polyg

Updated Mar 26, 2023
C++

scanpy

scverse / scanpy

Single-cell analysis in Python. Scales to >1M cells.

python data-science machine-learning bioinformatics transcriptomics visualize-data scanpy anndata scverse

Updated Apr 3, 2023
Python

broadinstitute / gatk

Official code repository for GATK versions 4 and up

science bioinformatics spark genomics genome ngs sequencing dna gatk

Updated Apr 4, 2023
Java

lh3 / minimap2

A versatile pairwise aligner for genomic and spliced nucleotide sequences

bioinformatics genomics sequence-alignment spliced-alignment

Updated Mar 17, 2023
C

scispacy

allenai / scispacy

A full spaCy pipeline and models for scientific/biomedical documents.

nlp bioinformatics spacy biomedical custom-pipes scientific-documents

Updated Mar 31, 2023
Python

lh3 / bwa

Burrow-Wheeler Aligner for short-read alignment (see minimap2 for long-read alignment)

bioinformatics genomics sequence-alignment fm-index

Updated Jan 27, 2023
C

lh3 / seqtk

Toolkit for processing sequences in FASTA/Q formats

bioinformatics sequence-analysis

Updated Feb 16, 2023
C

galaxyproject / galaxy

Data intensive science for everyone.

science workflow bioinformatics pipeline genomics workflow-engine ngs sequencing dna usegalaxy hacktoberfest

Updated Apr 5, 2023
Python

lightaime / deep_gcns_torch

Pytorch Repo for DeepGCNs (ICCV'2019 Oral, TPAMI'2021), DeeperGCN (arXiv'2020) and GNN1000(ICML'2021): https://www.deepgcns.org

data-mining bioinformatics computer-vision deep-learning cheminformatics social-network pytorch 3d-point-clouds graph-convolutional-networks science-research geometric-deep-learning graph-neural-networks deep-gcns

Updated Jul 31, 2022
Python

scipipe / scipipe

Robust, flexible and resource-efficient pipelines using Go and the commandline

go workflow bioinformatics pipeline cheminformatics workflow-engine bioinformatics-pipeline dataflow fbp scientific-workflows scipipe

Updated Feb 23, 2023
Go

shenwei356 / seqkit

A cross-platform and ultrafast toolkit for FASTA/Q file manipulation

golang bioinformatics cross-platform tool toolkit fasta manipulation sequence fastq

Updated Apr 3, 2023
Go

ewels / MultiQC

Aggregate results from bioinformatics analyses across many samples into a single report.

python bioinformatics analysis pypi bioconda multiqc

Updated Apr 4, 2023
Python

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Related Topics

genomics sequencing