Some new paths in function createNewDirForFile from Paths.h. Can be unavailable.
Example:
file = /home/utbot/.opam/4.08.0/share/sail/lib/sail.c
oldBase = /home/utbot/sail-riscv/c_emulator/SoftFloat-3e/build
newBase = /home/utbot/tmp/UnitTestBot/sail-riscv
result = home/.opam/4.08.0/share/sail/lib/sail.c
result not in temp directory.

Problem arise because we use relative paths to build a temporary directory structure.